Evolutionary Biology Creating a Phylogenetic Tree Paper
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Evolutionary Biology Creating a Phylogenetic Tree Paper
While moving samples from your lab’s DNA collections, one of your employees has lost the tag for a DNA sample. In order to identify the sample, you sequence DNA from the sample (called species “X”), and align it with sequences of the same gene from three other species. Both A and B are animals, while C is a plant . In the alignment below, a dot indicates that a species has the same base as the top (first) sequence. In other words, only the differences from the first sequence are shown.
- Complete the genetic distance matrix below comparing pairwise differences as genetic distance between all species (labeled A-X. Fill in the correct values for the six empty, unshaded boxes.
- Based on the distance matrix above, reconstruct a distance-based phylogenetic tree that best fits the data. Label all the branches with the appropriate branch length. Show your work.
(c) (Based on your results from this preliminary analysis, is species X most likely a plant or an animal?
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Problem 1: Evolutionary Biology Creating a Phylogenetic Tree Paper
You have been hired to be the head of a COVID-19 task force for Suffolk County and answer to the governor, in writing, with recommendations for this area of Long Island. Begin your paper with an Abstract, which summarizes the (1) overall purpose of the study and the research problem, (2) the basic design of the study, (3) major findings or trends, and (4)
recommendations. ** Sometimes it is easier to write this brief paragraph at the end when more information has been gathered! Next, include an Introduction, which explains about the details about the virus, it’s origin, timeframe and any other facts.
Then, the Problem, which includes statistics of age groups effected, those not affected, mortality rates and changes in how we have dealt with the virus in the past year. Next, the Solutions and Treatments. This includes drugs, therapeutics, and vaccines; pros and cons of what was initially done and what is now recommended and any experimental treatments and
how they work. Also, define a “vaccine” and why the one that has now been developed really is an “experimental gene therapy”! And lastly, Recommendations. From what you learned from your research and using the scientific method and experimental design, make logical recommendations.
Evolutionary Biology Creating a Phylogenetic Tree Paper
RUBRIC
Excellent Quality 95-100%
Introduction 45-41 points
The background and significance of the problem and a clear statement of the research purpose is provided. The search history is mentioned.
Literature Support 91-84 points
The background and significance of the problem and a clear statement of the research purpose is provided. The search history is mentioned.
Methodology 58-53 points
Content is well-organized with headings for each slide and bulleted lists to group related material as needed. Use of font, color, graphics, effects, etc. to enhance readability and presentation content is excellent. Length requirements of 10 slides/pages or less is met.
Average Score 50-85%
40-38 points More depth/detail for the background and significance is needed, or the research detail is not clear. No search history information is provided.
83-76 points Review of relevant theoretical literature is evident, but there is little integration of studies into concepts related to problem. Review is partially focused and organized. Supporting and opposing research are included. Summary of information presented is included. Conclusion may not contain a biblical integration.
52-49 points Content is somewhat organized, but no structure is apparent. The use of font, color, graphics, effects, etc. is occasionally detracting to the presentation content. Length requirements may not be met.
Poor Quality 0-45%
37-1 points The background and/or significance are missing. No search history information is provided.
75-1 points Review of relevant theoretical literature is evident, but there is no integration of studies into concepts related to problem. Review is partially focused and organized. Supporting and opposing research are not included in the summary of information presented. Conclusion does not contain a biblical integration.
48-1 points There is no clear or logical organizational structure. No logical sequence is apparent. The use of font, color, graphics, effects etc. is often detracting to the presentation content. Length requirements may not be met
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Evolutionary Biology Creating a Phylogenetic Tree Paper